PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769491.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21227.2 Da    PI: 10.3475
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.7e-191656242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    rien+ nrqvtfskRrn ++KKA+EL ++++aev +i+  +
  XP_009769491.1 16 RIENQNNRQVTFSKRRNSVFKKANELATMTGAEVGIIVCPQ 56
                    9************************************9755 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.67767IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-23766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-22877IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-15929IPR002100Transcription factor, MADS-box
PfamPF003192.2E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSTRLIKGRK SVRLARIENQ NNRQVTFSKR RNSVFKKANE LATMTGAEVG IIVCPQGSKP  60
YSFGHPNVNE TINKYVGEER PPSPSSPGID DKYVQMFRKA NSRELNTRLN SLQDQLDFEL  120
NLKSKLKQMN KSVESQQEWF KGPIEKMNYS EASMLKKGLE DLLLKVKNYG TERGYGYENG  180
KWKAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769491.11e-135PREDICTED: agamous-like MADS-box protein AGL62
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-28AGAMOUS-like 61